- #IMAGEJ SOFTWARE FOR MAC HOW TO#
- #IMAGEJ SOFTWARE FOR MAC FOR MAC#
- #IMAGEJ SOFTWARE FOR MAC INSTALL#
If you are an Imaris user with a valid MATLAB license, the executable path should be entered in the MATLAB Application field. The executable path /Applications/MATLAB/MATLAB_Compiler_Runtime/v711 is displayed the MATLAB Runtime Environment field. Click on MATLAB_Compiler_Runtime, then v711 and select the Choose button.
Select the Browse button to display the list of applications. If you are an Imaris user without a valid MATLAB license, the executable path (for MCR) should be entered in the MATLAB Runtime Enviroment field. There, depending on your system, you have two options. The executable path should be entered under the Custom Tools option. If you are a Mac user, in order to activate Imaris XTensions the key step is to define a valid MATLAB path. If you are a PC user, MATLAB and Imaris are automatically linked. MCR can be downloaded from the Bitplane Customer Portal and enables the execution of MATLAB files on systems without a full MATLAB version.
#IMAGEJ SOFTWARE FOR MAC INSTALL#
If you are Imaris user without MATLAB, you must install the MATLAB (full version) or MATLAB Compiler Runtime (MCR) on your system.
#IMAGEJ SOFTWARE FOR MAC HOW TO#
The following section will describe step by step how to set up a link between Imaris and either MATLAB compiler runtime (MCR) or MATLAB and activate available Imaris XTensions. The Imaris_Bridge.jar file is placed in a new subfolder, Imaris, within the Fiji application.Īfter installing the Imaris bridge file, all plug-ins are ready to be used. The file provides the link between the two applications and enables you to run your Fiji plug-ins in Imaris. Confirm it and the installation starts automatically. Once the executable path is confirmed, all options are active in the Fiji menu.Īs soon as you select the first plug-in a new window appears, asking you to install Imaris_Bridge.jar file. Select MacOS and then fiji-macosx and click the open button. Choose the Fiji application and select the Contents folder. If you are a Mac user, select the Browse button and Applications are listed. Click on the OK button and the executable path is displayed in the ImageJ/Fiji application field. If you are a PC user, select the Browse button, specify the Fiji folder, and select the. In the ImageJ/Fiji application field, the executable path must be entered. To specify the folder with the Fiji.exe file under the Fiji menu choose Options. However, all plug-ins are deactivated, until the Fiji folder is not specified. Now, in the Imaris Fiji menu, you can find a list of plug-ins. Fiji can be downloaded from the Bitplane Customer Portal.ĭepending upon your operating system, select the appropriate link and follow the specific download instructions. If you do not have Fiji, first you have to install it. The Imaris Fiji menu allows you to use your favorite Fiji plug-ins and yet continue with your work within Imaris. ImageJ/Fiji plugins within Imaris, enhance and extend Imaris functionalities by facilitating additional image processing and offering a solution for specific problems.
#IMAGEJ SOFTWARE FOR MAC FOR MAC#
The second part, for Mac users, shows which steps to follow in order to connect MATLAB (or MATLAB compiler runtime) to Imaris and thus activate the available Imaris XTensions. In the first part of this “How to” section, both PC and Macintosh users can find the instructions on how to activate ImageJ/Fiji plugins within Imaris. Please note that the instructions in this tutorial are valid up to Imaris 7.6.5
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